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Fixing Casper’s MySQL database with mysqlcheck

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After some VMware host issues that were out of my control, the RHEL VMs that my production and test Casper servers are hosted on were unexpectedly rebooted a couple of times. When I checked the VMs afterwards, everything appeared to be OK. I figured that I had been fortunate, until my Casper test server sent me the nightly “Successful backup of the Casper database” email and my production server didn’t.

Uh oh.

When I checked the directory when my production server stores its backups of the Casper database, there wasn’t a backup from the night before. I immediately launched the JAMF Database Utility application and had it make a backup of the production database. A task which normally would take 10 minutes or so now took 40 minutes.

Not good.

To lighten the load on the database, I went into the JSS and had it manually flush all but the last week’s worth of logs (I normally retain 30 days of logs.)

Screen Shot 2014-02-01 at 5.12.10 PM

Screen Shot 2014-02-01 at 5.12.50 PM

Once the log flush had completed, I then rebooted the box. On reboot, the JSS initialized and then hung halfway through the JSS startup process.

Screen Shot 2014-02-01 at 4.53.48 PM

Really not good.

For the details of how I fixed this, see below the jump.

Casper’s JSS server software comes in two parts, a Tomcat web application and a MySQL database named jamfsoftware. As far as I could tell, the Tomcat part was OK but was having problems communicating with Casper’s jamfsoftware MySQL database.

To ensure that my Casper-managed Macs were not trying to update the database while I was working on fixing it, I stopped the Tomcat web application by running the following command as root:

/etc/rc.d/init.d/jamf.tomcat7 stop

Screen Shot 2014-02-01 at 5.01.31 PM

I then restarted MySQL with the following command:

/etc/init.d/mysqld restart

Screen Shot 2014-02-01 at 5.04.17 PM

After the MySQL restart, I ran the following mysqlcheck command to repair the database:

mysqlcheck -repair jamfsoftware -u root -p

Screen Shot 2014-02-01 at 5.22.34 PM

In this case, mysqlcheck was set to repair all of the tables in the jamfsoftware database.

90 minutes later, the repair process had finished checking and repairing the database. I then ran optimization with mysqlcheck using the following command:

mysqlcheck -o jamfsoftware -u root -p

Screen Shot 2014-02-01 at 5.23.17 PM

Since the database tables had just been repaired, optimization finished within seconds. I then rebooted the server. I could have just restarted the Tomcat web application, but I wanted to make sure everything worked on restart.

Screen Shot 2014-02-01 at 5.09.32 PM

On restart, the Casper service started up normally. Later that night, I once again received the nightly “Successful backup of the Casper database” email from both my test and production servers.

Screen Shot 2014-02-01 at 4.59.57 PM



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